Our publications

Our international team of scientists collaborates across different scientific and medical fields to define new frontiers of innovation. Here you can find relevant scientific work published in peer-reviewed scientific journals.

Liudmila Voronina, Frank Fleischmann, Jelena Šimunović, Christina Ludwig, Mislav Novokmet, Dr. Mihaela Žigman

02/22/2024
Life science
Probing Blood Plasma Protein Glycosylation with Infrared Spectroscopy
The health state of an individual is closely linked to the glycosylation patterns of his or her blood plasma proteins. However, obtaining this information requires cost- and time-efficient analytical methods. We put forward infrared spectroscopy, which allows label-free analysis of protein glycosylation but so far has only been applied to analysis of individual proteins. Although spectral information does not directly provide the molecular structure of the glycans, it is sensitive to changes therein and covers all types of glycosidic linkages. Combining single-step ion exchange chromatography with infrared spectroscopy, we developed a workflow that enables the separation and analysis of major protein classes in blood plasma. Our results demonstrate that infrared spectroscopy can identify different patterns and global levels of glycosylation of intact plasma proteins.
published in  Analytical Chemistry

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Maciej Kowalczyk, Arun Paudel, Aleksandar Sebesta, Philipp Steinleitner, Nathalie Nagl, Markus Poetzlberger, Vladimir Pervak, Ka Fai Mak, Alexander Weigel

06/21/2023
Laser science
Ultra-CEP-stable single-cycle pulses at 2,2 µm
Single-cycle optical pulses with controllable carrier-envelope phase (CEP) form the basis to manipulate the nonlinear polarization of matter on a sub-femtosecond time scale. We report a highly stable source of 6.9-fs, single-cycle pulses at 2.2 µm, based on a directly diode-pumped Cr:ZnS oscillator with 22.9-MHz repetition rate. Excellent agreement with simulations provides a precise understanding of the underlying nonlinear pulse propagation.
published in  Optica

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Tarek Eissa, Kosmas V. Kepesidis, Mihaela Žigman, Marinus Huber

04/12/2023
Life scienceData science
Limits and prospects of molecular fingerprinting for phenotyping biological systems revealed through in silico modeling
Molecular fingerprinting via vibrational spectroscopy characterizes the chemical composition of molecularly complex media, which enables the classification of phenotypes associated with biological systems. However, the interplay between factors such as biological variability, measurement noise, chemical complexity, and cohort size makes it challenging to investigate their impact on how the classification performs. Considering these factors, we developed an in silico model that generates realistic but configurable molecular fingerprints.
published in  Analytical Chemistry

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Shizhen Qu, Arun Paudel, Aleksandar Sebesta, Philipp Steinleitner, Nathalie Nagl, Markus Poetzlberger, Vladimir Pervak, Ka Fai Mak, Alexander Weigel

11/22/2022
Laser science
Directly diode-pumped femtosecond Cr:ZnS amplifier with ultra-low intensity noise
A diode-pumped Cr:ZnS amplifier is showcased, delivering 2.2 W of 35-fs pulses with low noise and high stability. This amplifier holds promise for generating ultrashort infrared pulses, particularly for ultrasensitive vibrational spectroscopy.
published in  Optica

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Philipp Steinleitner, Nathalie Nagl, Maciej Kowalczyk, Jinwei Zhang, Vladimir Pervak, Christina Hofer, Arkadiusz Hudzikowski, Jarosław Sotor, Alexander Weigel, Ferenc Krausz, Ka Fai Mak

05/26/2022
Laser science
Single-cycle infrared waveform control
This study extends electric-field waveform control of ultrashort light pulses from visible to mid-infrared, generating single-cycle infrared pulses with broad applications, including material manipulation and molecular fingerprinting in biological systems.
published in  Nature

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Kosmas V. Kepesidis, Masa Bozic-Iven, Marinus Huber, Nashwa Abdel-Aziz, Sharif Kullab, Ahmed Abdelwarith, Abdulrahman Al Diab, Mohammed Al Ghamdi, Muath Abu Hilal, Mohun R. K. Bahadoor, Abhishake Sharma, Farida Dabouz, Maria Arafah, Abdallah M. Azzeer, Ferenc Krausz, Khalid Alsaleh, Mihaela Žigman, Jean-Marc Nabholtz

12/02/2021
Life scienceData science
Breast-cancer detection using blood-based infrared molecular fingerprints
Current breast cancer screening, primarily using mammography, has limitations such as false results, prompting the need for innovative methods to improve early detection. This study explores the potential of FTIR spectroscopy on blood plasma, a rapid, cost-effective technique, to enhance breast cancer detection through molecular analysis.
published in  BMC Cancer

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Marinus Huber, Kosmas V. Kepesidis, Liudmila Voronina, Frank Fleischmann, Ernst Fill, Jacqueline Hermann, Ina Koch, Katrin Milger-Kneidinger, Thomas Kolben, Gerald B Schulz, Friedrich Jokisch, Jürgen Behr, Nadia Harbeck, Maximilian Reiser, Christian Stief, Ferenc Krausz, Mihaela Žigman

09/13/2021
Life scienceData science
Infrared molecular fingerprinting of blood-based liquid biopsies for the detection of cancer
Recent omics studies on human biofluids using FTIR spectroscopy highlight the capability of infrared molecular fingerprinting to detect breast, bladder, prostate, and lung cancer, with AUC values ranging from 0.78 to 0.89. These results uncover unique spectral patterns for each cancer type and lay the groundwork for cost-effective onco-IR-phenotyping in efficient disease identification.
published in  eLife

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Dr. Liudmila Voronina, Cristina Leonardo, Johannes B. Mueller-Reif, Dr. Philipp E. Geyer, Dr. Marinus Huber, Dr. Michael Trubetskov, Dr. Kosmas V. Kepesidis, Prof. Jürgen Behr, Prof. Matthias Mann, Prof. Ferenc Krausz, Dr. Mihaela Žigman

04/21/2021
Life science
Molecular origin of blood-based infrared spectroscopic fingerprints
Using infrared spectroscopy on liquid biopsies, alongside biochemical fractionation and proteomic profiling, helps us understand the molecular reasons behind disease-related alterations in infrared fingerprints. This approach, which combines proteomics, spectral data, and machine learning, improves our comprehension of liquid biopsy infrared spectra and its potential for researching various diseases.
published in  Angewandte Chemie

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Marinus Huber, Kosmas V. Kepesidis, Liudmila Voronina, Maša Božić, Michael Trubetskov, Nadia Harbeck, Ferenc Krausz, Mihaela Žigman

03/08/2021
Life scienceData science
Stability of person-specific blood-based infrared molecular fingerprints opens up prospects for health monitoring
Studying the stability of individual biochemical fingerprints in blood serum and plasma samples from healthy individuals using FTIR spectroscopy supports the idea that blood-based infrared spectral fingerprinting could be a dependable method for health monitoring. This approach provides unique spectral markers for identifying and monitoring changes in molecular characteristics over time.
published in  Nature Communications

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Ioachim Pupeza, Marinus Huber, Michael Trubetskov, Wolfgang Schweinberger, Syed A. Hussain, Christina Hofer, Kilian Fritsch, Markus Poetzlberger, Lenard Vamos, Ernst Fill, Tatiana Amotchkina, Kosmas V. Kepesidis, Alexander Apolonski, Nicholas Karpowicz, Vladimir Pervak, Oleg Pronin, Frank Fleischmann, Abdallah Azzeer, Mihaela Žigman, Ferenc Krausz

01/20/2020
Laser scienceLife scienceData science
Field-resolved infrared spectroscopy of biological systems
Broadband optical coherence, which utilizes vibrationally excited molecules and electro-optic sampling, allows for the sensitive detection and spectroscopic analysis of complex molecular structures in living systems. This includes applications in human cells, plant leaves, and blood serum, promising improved sensitivity and broader utility in real-world biological and medical scenarios.
published in  Nature

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